Oh, definitely. Chrono Cross comes to mind. I like the game for what it tries to be (a sequel to Chrono Trigger that stands on its own, not simply Chrono Trigger 2), but it seems like they only remembered it was supposed to be a game halfway through development and god damn what the hell is going on fuuuuuuuuu
Here is a great article about the game. It actually made me want to play it again, despite knowing the horrors that await me.