If you want to follow what redump do to create bin+ape then look at the
www.redump.org site they have dumping guides for CD games, there method use BIN+WAV/BIN dumping then compress via ecm and ape
To do there method from a disc image just mount that to a Virtual CD drive like Daemon Tools
alternatively you can still mount it but use Turborip that was made more for ripping PC Engine CD's, but will work with anything
Turborip is fast I just don't like the naming convention, but if you are converting back to a single Bin+Cue it really does not matter
I have never bothered or had a want to do this so never tried but I have seen games with replaced CDDA (Compact Disc Digital Audio)
Just google Turborip you should be able to get that from the top few links
Turbo rip outputs wav's Plus an iso file and cue, think it also creates a toc file, but that might only be created for PC-Engine CD's, I don't remember
iso files are Binary images (the same as bin images) but they can not store CDDA tracks inside them but if you have read my ecm + ape guide, the converting process to a single bin+cue is the same
There is also another tool I am using at the moment but it's a command prompt type tool so it might seem a bit awkward to use, by default it creates cso+mp3's+cue images via dragging and dropping a cue file on it but you can use it to create iso+wav+cue via the command prompt using build in options
With this one you do not need to mount a CD image first as long as the CD image has a cue sheet you can use this
You can either just create a small bat file with the commands in or use the command prompt, make sure the program and supporting files are in the same folder as the original CD image before running it
In the code has the bin_to_cso_mp3 options and an example of what to type in it to get a iso+wav's+cue, it will create a folder named the same as the input cue with the files stored inside of it
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bin to cso mp3 can be found at
http://www.epforums.org/showthread.php?90410
EDIT:- Just thought of a really very easy way for you
Jump to my ECM+APE guide grab the cue's and sbi's open that make sure there is a cue file for your game in there, if not grab one from the redump.org site, you can find the cue file if you look up the exact game you are wanting to do this with once you have the info for that game on screen there should be some links up top for varies files including one for the cue
Open that cue file with notepad (keep it open for now) first change bin" BINARY to wav" WAVE
Find & replace from
bin" BINARY to
wav" WAVE replace all
Re edit the first line and change
wav" WAVE back to
bin" BINARY for the first line only
Still keeping the cue file open take note of the first Binary file name
then open bin+cue image with ISO buster extract the data track only as a *.bin giving it the same name used in the cue file that you have open
rename all replacing wav files you want to add to this game given them the same names used in the cue file you have open in notepad