http://wiki.pcsx2.net/index.php/SD_G...eneration_Seed
Report your findings, help out and in turn you get helped by the userbase/devs.
THE BEST METHOD to run PSX games (and everything else for that matter) is via Retroarch - http://buildbot.libretro.com/nightly/
If you have any questions on how to set it up on Windows please feel free to ask, its very easy.