Modded versions of WWF No Mercy are as cool as the actual game!
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I have to compromise and mention several:
Super Smash Bros.
Yoshi's Story
Mario 64
Ogre Battle: Person Of Lordly Caliber. Underrated and underplayed. Best RPG on 64. SO GO PLAY IT! Its RTS/RPG. More mature than Zelda games.
Not many of those on the N64, so not much of an effort required there... :P But yes, great game.
Now, without resorting to the obvious... Let's see... I'll give you three:
- Rayman 2 - The Great Escape: Not an exclusive, but a great game nonetheless...
- Body Harvest: You'll notice the GTA influence here (or is it the other way around?) Made by DMA. Play this.
- Harvest Moon 64: Speaking of harvests... I was glued to this game for the longest time...
I must compromise as well I have three on my list.....
Shadowgate 64 Trials of the Four Towers (definitely one of the most under-appreciated games on the N64)
Quest 64 (really good RPG battle system)
and last but not least......
Blast Corps (really how could anyone not like this game for the sheer fun-ness factor)
I really enjoyed Space Station: Silicone Valley when it came out.
*Edit* Oh yeah... there was that one wrestling game that had the Black ninja in it. I think it was WCW vs. NWO or something. That one was great. Also RUSH 2. Many hours were passed racing my cronies in that game. We still play it to this day.
My 3 favorite are a tie for number one:
1. Perfect Dark
2. No Mercy
3. goldeneye
I have 4 favorite's, all tied, hard to pick just 1
Shadow gate 64
Goldeneye
Majora's mask
Ogre Battle: Person of Lordly Caliber
I'm actually amazed so far that Jazz is the only person to mention Super Smash Bros.
For a multiplayer game, that was one of the best ones out there. Although Perfect Dark still remains high on my list of best N64 games ever, in particular the multiplayer. I lost a lot of hours of my life to that game.
Really close between SSB and OOT
legend of zelda ocarina of time, majora's mask,
Back in the days of the N64, my favorites were Turok 1 and Star Wars: Shadows of the Empire (Doom 64 is probably my favorite Doom, too).
The game I think aged the best, though, is Blast Corps. Awesome game.