That's what I thought, but track 3 is fucking short. :P
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That's the odd thing. Oh, and I screwed up: the indices seem to mark where they start for most of these, except track 2. I don't know how these were made originally, either; the torrent only contained the TTA, CUE, txt track lists, and logs of the conversion (in Japanese).
Screw you guys, I'm going home :P
You aren't already?